The only differences in the left and right Generation 2 motor is the cross shaft that the large plastic gear is mounted on. The shaft is specific to right or left motors. You can remove the metal plate from the end of the shaft and put the gear onto the shaft of the opposite side motor.
When you separate the motor case, note the orientation of the motor stator. If it's opened for the first time, it will usually have a spot of white latex sealant on the shiny metal housing or it may come off on the inside of the thinner half of the case. Mark the stator by scribing an X on it since magic markers may wipe off during cleaning.
Remove EVERY BIT of old grease and bump stops from inside the case. Use an old dental pick to get it out of the teeth of the small gear. You will need to find your own method of getting the gears off and reinstalled so that the metal drive plate will stay on the shaft. You want to be very careful about damaging the threads of the shaft. Keep the nut screwed on and flush with the top of the shaft threads.
If you're swapping out old gears, you will have a problem with bump stops. Some have used pieces of threaded rod, packed the cavities with J&B Weld and RTV Sealant. Bumpstops that are too soft will give you problems with the motor failing to turn off at the end of travel and bumpstops too hard will either cause the drive plate to come off the shaft or break the four fingers of the plate.
You would be best to order a gear kit from one of the Fiero vendors. The Fiero Store again offers a rebuild kit with everything you need. They had some problems with quality control and pulled them off the market twice. Hopefully they've gotten them corrected this time. Rodney Dickman also sells a metal gear rebuild which in my opinion is superior in design and ease of use over that offered by The Fiero Store. Again, my opinion, only. I've not read any complaints about his metal gear kit.
When reassembling, fill the teeth of the small and large gear with Syl-Glyde High Temperature Synthetic Slider Grease. It won't harm plastic if you use plastic gears. Put a tiny stream of RTV in the groove of the case half and reassemble. Be sure that the rubber weather D seal at the top of the motor is in it's position inside the case.
Be very careful to not snag the brushes of the limiter switch in the notches of the commutator when reinstalling the limiter. They are old and pop off easily.
If you prefer, I rebuild with the gear of your choice. you can have it drop shipped to me to arrive at the same time your motor arrives. $30 labor plus return shipping. If I order your gear, add that to the price without any markup.
[This message has been edited by fierofool (edited 03-20-2015).]