Might I suggest you search the archives. Pleanty of people use the "stock setup" that comes on the 3800 in their swaps. I'm one of those people.
The main reason why people delete this bracket from the 3800 in their swaps is so they can run a conventional dog-bone mount in that location on the engine; because they are using conventional type Fiero mounts on the engine. I don't do that in my auto trans swaps; so I don't need a dog-bone. But in the latest manual trans 3800 swaps I have done, I have created a dog-bone mounting bracket that bolts directly to the 99-up 3800 alternator mounting bracket. In auto swaps, I leave the bracket on there and usually mount the ignition coil in that location.
As you know the stock 3800 alternator bracket has pass-thru passages for both the heater supply and return lines. When I do engine swaps into 87-88 Fieros, the heater return line from the heater core already dumps into the passenger side coolant tube. So there is no need to run the return all the way up to this bracket on the engine. Instead what I do is use that (return) port coming off the bracket to connect to a port that I mount next to the strut tower which serves as the NEW coolant fill port (see below). This elimintates the need to use the bulky Fiero T-stat housing on the 3800. The heater supply line coming off this bracket connects to the stock heater supply line in the Fiero. Pretty straightforward.
Something else important to note. The alternator bracket that comes on these 3800 Series 2 and 3 engines also contains the bypass circuit for the cooling system. This is designed to prevent excessive coolant pressure from building in the engine (via the water pump) when the thermostat is closed IN CASE the heater core system becomes plugged. It also serves to reduce pressure in the heater core circuit in normally operating systems. If you remove the stock alternator bracket from the 3800 and do not build in a bypass circuit externally; if you have a restriction form in the heater core system, excessive pressure can build up from water pump operation during periods when the t-stat is closed that can result in blowing out the heater core or related hoses/lines.
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5+ years on this same swap -- NO engine or transmission failures...
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